rs3090205 SNP Detail

Summary

• ID
  rs3090205
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:110358961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTACATGCA TGCATACATG TTATATATAT ATAACTGAGG TACAAGTGGG
  TGGGAAATAT TGTAAGAGCA AGAATATCAG GACATCAGCT ATGAAACAGT GGCTCCTAGA
  AAAGGCCACA TAAACAAGAC CCGAATAATG GCAATGTTTA CATGGAAGGG GATACATTTC
  W
  TGGAGTCCCA CCCCTAAACA AAGAACTAGA GTCAACAAGA ATCCACCTTT ACCAGGGATG
  AGCCCCATAT TGGTTATCCA AAACTAAGTG ATCAGCCAAA TACACACAAA CAACAACAAA
  AAAAAATGGA CTCACCAAGG GATGTGTGTG CATGTATGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2	LG/J	SM/J
ss4327105	D10Mit150-1	WIMOUSESNPS	MITROCHE_POP	f	SNP	T	T	T	T	T	T	A	T
ss323463803	CHEV_10_109960156	CHEVERUD	SCREENING_POP	f	SNP									T	A
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2	LG/J	SM/J
rs3090205					SNP	T	T	T	T	T	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:110358961 () rs orientation: forward

Symbol	Name	Function Class
D10Mit150	DNA segment, Chr 10, Massachusetts Institute of Technology 150	131 bp proximal