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rs30902100 SNP Detail
Summary
  • ID
    rs30902100
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:137879393 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATGTCACCG AGGTCCCCTG
    GTGGCCTCTC GATGTAATCG CCTGGGTGGC CTCTGTGTTA AATCACCTGG TGGTTTCTGT
    GTTTAATCAC CTGTGTAGCT GACGCTCTCT AGATCCAGTC AGCGCTTTCA GCTTTGCACG
    TGAGTTTTGC AGCAGTTTGG TTGTGGGTGT TCCGGAGGTG TACGGCTTCC TGGGCTCTGC
    K
    GCTGGTTCTG TTGGGGTGTT TGCTCTGTGG CGAGTCAACA GGTTTATCTC AGCTAGCTCA
    GAATGAACCA GAGCTGATAC CCATTCCTTT TCTGATTTGG AAAAAGGAAA AGGTTGGAGA
    GCATGGGTTA CCGCTGTCAT TGTTACATTG ACTGGAAGCG CGTCATCGTC ACACATTTAT
    GTTGTTTCAG TGTTCACTGC                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46995553 NES10871649 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T G T T G T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30902100 SNP T T T T T T T T T G T T G T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46995553 NES10871649 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:137879393 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930579F01Rik RIKEN cDNA 4930579F01 gene Coding-Synonymous
Rr586090 regulatory region 586090 840 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory