rs3090212 SNP Detail

Summary

• ID
  rs3090212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941655 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAAAA GAATGTCACT GGATGGACCA
  R
  CACCCAACTG ACCAGGGCTG GGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	129X1/SvJ	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss4327112	MUSMHKA1A-1	WIMOUSESNPS	MITROCHE_POP	f	SNP		A		G		G		G				A		A						A				A
ss16379727	11.099.634	TWGNF	TWGNF-Mouse-2	f	SNP	A		A		G		G		G	A	G		A		A	A	A	A	A		G	G	A			G		A		G	A	A	G		G	G	G	G	A	A	G	G		G	G	A	G	G	A	A	G	G	A
ss37285880	NES08555742	PERLEGEN	MM_PANEL2	r	SNP	T				C		C		C	T			T							T					T		T		T					T		C			T				C									C
ss323830619	CHEV_11_99912143	CHEVERUD	SCREENING_POP	r	SNP																														C																		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	129X1/SvJ	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs3090212					SNP	A	A	A	G	G	G	G	G	G	A	G	A	A	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	A	G	A	A	G	A	G	G	G	G	A	A	G	G	G	G	G	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285880	NES08555742	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941655 () rs orientation: reverse

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	48 bp proximal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	within coordinates
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	within coordinates
Gm11571	predicted gene 11571	1457 bp upstream
Krt31	keratin 31	278 bp upstream
Tssr104894	transcription start site region 104894	1275 bp upstream
Tssr104895	transcription start site region 104895	1431 bp upstream
Tssr104896	transcription start site region 104896	1452 bp upstream
Tssr110726	transcription start site region 110726	272 bp upstream