rs30902300 SNP Detail

Summary

• ID
  rs30902300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189136770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG GTGGATCTTC TCACCTCAAA
  Y
  GATCTGGATT AAAGGTAGAT CTTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44975449	mCV23936152	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146486018	ENSMUSSNP4513792	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320190821	CHEV_1_191228452	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30902300					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189136770 () rs orientation: forward

Symbol	Name	Function Class
Rr372626	regulatory region 372626	1040 bp upstream
Rr425790	regulatory region 425790	1865 bp distal
Rr425791	regulatory region 425791	1114 bp distal
Rr425792	regulatory region 425792	614 bp proximal
Tssr15714	transcription start site region 15714	1812 bp upstream
Tssr15715	transcription start site region 15715	1803 bp upstream