rs3090238 SNP Detail

Summary

• ID
  rs3090238
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147402424 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ATGTGTGTTG CCTTTTTGAA
  GGCCAGACAA GGTGTGAGGG GGAGTTGGCA ATGACATCAC CACAAACACA TGAGCTTCAA
  CATCGTACAC CCCAGACACA CGTCCTCACA GGGCTGTTGT CCTCACAGGG CTGTTCAAGG
  ACAAGGACAG CCTTGAAACT CTATGCAGAT GATGCTGATC TCACAATCAC CATTGAATGT
  W
  ATTTAAACAG ATACCCAGGT GATTTCATAA AAGTCTACCT TTCAAAGTTA GATGATGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTTGT ATGTAGGTGA
  TCTGTCTGTC ATTCAGTGTT CCCCAGGAAA ATAGATATGT ATGTACTCAT AGTATTTTAT
  TGACTTTTTG TTTCAAGAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss4327138	D12Mit253-1	WIMOUSESNPS	MITROCHE_POP	f	SNP		A	A		A		A			A		A	T	A
ss47032227	NES10846522	PERLEGEN	MM_PANEL2	r	SNP	T			T		T		T	T		T		A		T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3090238					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47032227	NES10846522	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147402424 () rs orientation: reverse

Symbol	Name	Function Class
D3Mit1002	DNA Segment, Chr 3, Massachusetts Institute of Technology 1002	15 bp distal
D3Mit1003	DNA segment, Chr 3, Massachusetts Institute of Technology 1003	within coordinates