rs30902648 SNP Detail

Summary

• ID
  rs30902648
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8931037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC GATTCTTCGG GCCAATCAAC
  S
  CTGGAGTAGA ACGAAGCTCT CCAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44976116	mCV24151336	ABI	CRAMUS_MOUSE	f	SNP	G	G	C					G		G
ss50609124	NES13644056	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	G	C		G	G	G	C		G	G	G	G		C
ss146030825	ENSMUSSNP5270740	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							G
ss325718261	CHEV_19_9028163	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30902648					SNP	G	G	C	G	C	G	C	G	G	G	G	C	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609124	NES13644056	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8931037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10588	CpG island 10588	within coordinates
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	1378 bp downstream
Rr363780	regulatory region 363780	within coordinates
Rr405849	regulatory region 405849	within coordinates
Tssr154900	transcription start site region 154900	1588 bp downstream
Tssr154901	transcription start site region 154901	153 bp upstream
Tssr154902	transcription start site region 154902	188 bp upstream
Tssr154903	transcription start site region 154903	213 bp upstream
Tssr154904	transcription start site region 154904	304 bp upstream
Tut1	terminal uridylyl transferase 1, U6 snRNA-specific	174 bp upstream