rs3090276 SNP Detail

Summary

• ID
  rs3090276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  103
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106766069 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                       AAGCGG GCTCCTGACA ATNAGATGTG
  AACCTAGAGC TTTCCTAGTG ATGCTGGCTC TGCAGTTCCC TCTTGCCCAT CCCCGAGTGG
  R
  GACAATTTCC CCATCCCCAA GTGGGGACAA TTTACTTCCT TCTTTGCTGG TTTACTCTAG
  GACTTCAAAG TTTGTCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ
ss4327178	M-04055-2	WIMOUSESNPS	MITROCHE_POP	f	SNP	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ
rs3090276					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106766069 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	1193 bp distal
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rbm15b	RNA binding motif protein 15B	1795 bp upstream
Rr401656	regulatory region 401656	1392 bp downstream
Rr686406	regulatory region 686406	1579 bp distal
Rr686407	regulatory region 686407	952 bp distal
Rr686408	regulatory region 686408	834 bp distal
Tssr86942	transcription start site region 86942	1311 bp upstream
Tssr91351	transcription start site region 91351	1776 bp upstream
Tssr91352	transcription start site region 91352	1758 bp upstream