rs30902802 SNP Detail

Summary

• ID
  rs30902802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108640494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGACTTAC AAATAAAGAG CCTAGTTAAA CTGCACGGAG
  GAAATGCAAC TATTTGATGA ATAGGTTAGG TTTCTGTGTG TGCAGCAGTT GTTGGAGTTG
  Y
  TGGTTTTAGT TTTGTGGTGG TTTTGGTTGT TCTGGTTTTG GTTTTCCTAA AGCTCAGAAG
  TAACCTGCCA GCCTCACCCT CCCAGGCGGG GGGATTACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45976232	mCV24297773	ABI	CRAMUS_MOUSE	f	SNP		T				T		C
ss51810812	NES14774572	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30902802					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51810812	NES14774572	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108640494 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe40	basic helix-loop-helix family, member e40	Intron
Cpgi17812	CpG island 17812	1800 bp distal
Rr399817	regulatory region 399817	1651 bp downstream
Rr636159	regulatory region 636159	1546 bp distal
Rr636160	regulatory region 636160	47 bp proximal
Tssr58078	transcription start site region 58078	1756 bp downstream
Tssr58079	transcription start site region 58079	1537 bp downstream
Tssr58080	transcription start site region 58080	1190 bp downstream
Tssr58081	transcription start site region 58081	755 bp downstream
Tssr58082	transcription start site region 58082	391 bp downstream
Tssr58083	transcription start site region 58083	1206 bp upstream
Tssr58084	transcription start site region 58084	1480 bp upstream
Tssr62392	transcription start site region 62392	1452 bp downstream