rs30902829 SNP Detail

Summary

• ID
  rs30902829
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45228218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT TGTCCTTTTC TTCTCTCCTC
  W
  ACCACAGAAG ATGGTCTGAA CTGGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39233945	mCV25250233	ABI	CRAMUS_MOUSE	f	SNP	T		T	A
ss139365030	ENSMUSSNP5036640	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30902829					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45228218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	909 bp distal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	875 bp upstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491041	regulatory region 491041	431 bp distal
Tssr4380	transcription start site region 4380	1949 bp upstream
Tssr125204	transcription start site region 125204	1842 bp downstream
Tssr128221	transcription start site region 128221	1082 bp upstream
Tssr128222	transcription start site region 128222	891 bp upstream
Tssr128223	transcription start site region 128223	835 bp upstream