rs30902988 SNP Detail

Summary

• ID
  rs30902988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137879948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATTGC CCCCAAGCAT
  TTTCCAATTA AAAGGTGGTC TGGAACTCTA TAGCAAGGTG CTATTTTCCC AAAATGCTCC
  CCATTCTCAA AGCATGTGCC CCAGACCAAC ACCACCCATC AGTATCACCC CAGAACTTGT
  TACAAAAGCA GATTCTTGGA GCCCCTGTAG GAGGTTTTGA CTCAGTTTGA TGATCAGCTA
  R
  TTTGAGGATA TCTGTTGTGT GCTGAGTGAA TTGCCTTGCG TGGGACTGGT GTTTTCTTGA
  CATATACCAG GGAAGCCCAA GAGAGGCCAA GAGACAACTG TGTCACTAGC TAAGATTAAG
  TGCTCATGGC TATTAGGAGC CTGCAGCATG GAAGGCCATG CTGCTGCCGT CCACAGCAAA
  GGAAGGAAAT GAGCCTGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46995561	NES10871507	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30902988					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995561	NES10871507	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137879948 () rs orientation: forward

Symbol	Name	Function Class
4930579F01Rik	RIKEN cDNA 4930579F01 gene	Intron
Rr586090	regulatory region 586090	1395 bp distal