rs30903283 SNP Detail

Summary

• ID
  rs30903283
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3030708 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  ATCACTGAAA AACATGAAAA ATGAGAAATG CACACTGTAG GACCTGGAAT TTGGCGAGAA
  AACTGAAAAT CACAGAAAAT GAGAAATACA CACTTTAGGA CGTGAAATAT GGCGAGCAAA
  ACTGAAAATG GTGGAAAATT TAGAAATGTC CACTGTGGGA CATGGAATAT GGCAAGAAAA
  CTGAAAGTCA TGGAAAATGA GAAACATCTA CATCACAACT TGAAAAATGA CGAAATTACT
  GAAAAACGTG AAAAATGAGA AATGCACACT GTAGGACCAG GAATATGGCA AGATAACTGA
  W
  AATCACGTAA AATGAGAAAT ACACACTTTA GGACGTGAAA TATGGCAAGG AAAAATGAAA
  AAGGTGGAAA ATTTAGAAAT GTCCACTCTA GGACATGGAA TATGGCAAGA AAACTGAAAA
  TCATGGAAAA TGAGAAACAT CCACTTGACG ACTTGAAAAA TGACGAAATC ACTGAAAAAT
  TTGAAAAATG AAAAATACAT ACTTTAGGAC GTGAAATATG GCGAGGAAAT CTGAAAAAGG
  TGGAAAATTT AGAAATGTCC ACTGTGGGAC ATGGAATATG GCAAGAAAAC TGAAAATCAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46456721	mCV22851945	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30903283					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3030708 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21325	CpG island 21325	998 bp distal
Cpgi21326	CpG island 21326	1179 bp proximal
Cpgi21327	CpG island 21327	1643 bp proximal
Rr673610	regulatory region 673610	668 bp distal
Rr673611	regulatory region 673611	within coordinates
Rr673612	regulatory region 673612	1423 bp proximal
Tssr83588	transcription start site region 83588	1313 bp downstream
Tssr83589	transcription start site region 83589	1032 bp downstream
Tssr83590	transcription start site region 83590	532 bp downstream
Tssr83591	transcription start site region 83591	360 bp upstream
Tssr83592	transcription start site region 83592	390 bp upstream
Tssr83593	transcription start site region 83593	1176 bp upstream
Tssr83594	transcription start site region 83594	1291 bp upstream
Tssr83595	transcription start site region 83595	1639 bp upstream
Tssr83596	transcription start site region 83596	1727 bp upstream
Tssr88023	transcription start site region 88023	1288 bp upstream
Tssr88024	transcription start site region 88024	1203 bp downstream