rs3090413 SNP Detail

Summary

• ID
  rs3090413
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91762349 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AAAAAACCAA GCCGGAGGTG
  AGCCGGGCCT CGAAGGGAAG GTTCGCGGGT GCGGTGGCCG CCCCGAGCCT GTGACACCAG
  GACATACTCC CGGGGCCCGC GGTGGGCAAG CGAAGTGGTG ACCTGAGAGC TGACAGGCTG
  CGAGAGGGAA AAGTATAGAC AGGCCTAGAC CAGGGGAAGG GGAGGGGATA GAGAGCTGGG
  S
  CTGCTACGAG GGGACCTGAG CCAGAAGCGC ACTGGTAAAA CCGAACTCCA GGACCAGAGA
  CCCAGAGATC AGAGGTGAGA GGCACAGACG CGGGAGTCCC GGCTCGGCGA GGGGCGGGAG
  TGGAGGCGGG GACTAGGGGG GTCTGGGGAG GTGCGGGTTT GGGGGGAGGG GGCGGGTCCT
  TCCACGGGAT GGGGGGAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4327318	MUSMKPG-1	WIMOUSESNPS	MITROCHE_POP	f	SNP	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3090413					SNP	C	C	C	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91762349 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi11916	CpG island 11916	within coordinates
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	33 bp distal
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	within coordinates
Dgkz	diacylglycerol kinase zeta	820 bp downstream
Gm39876	predicted gene, 39876	within coordinates
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	1 bp upstream
Rr560809	regulatory region 560809	1777 bp distal
Rr560810	regulatory region 560810	within coordinates
Rr560811	regulatory region 560811	283 bp proximal
Tssr25213	transcription start site region 25213	1066 bp upstream
Tssr25214	transcription start site region 25214	470 bp upstream
Tssr25215	transcription start site region 25215	334 bp upstream
Tssr25216	transcription start site region 25216	318 bp upstream
Tssr25217	transcription start site region 25217	281 bp upstream
Tssr25218	transcription start site region 25218	232 bp upstream
Tssr25219	transcription start site region 25219	211 bp upstream
Tssr25220	transcription start site region 25220	15 bp upstream
Tssr25221	transcription start site region 25221	within coordinates