rs3090419 SNP Detail

Summary

• ID
  rs3090419
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:78918763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTAAGCA ATCATATTGT
  TGGGATTTCA TGGAAGCATT TTCCCTGTTG CATGTAAAAG ACATTATTTC TAAACAGACT
  TCCTAATCCA GTAACTCTTA CAACTTTCCA CGATAACGAT AATTACAGCA ATTGCTCCTG
  AACCTCAGCT ATAGACATTG TATTTAGACG ACTATAAGTT AGAGATGAGA CCCTTGATAA
  K
  GGTCCAATCC CATATGCTCT TCATTAAACA CATATAAACA CATTAAACAT ATATAGATAA
  GAACAACACT AAGGGCAATT AGCAATGTGT GTGTGTGTGT GTGTGTGTGT TGGTGCGGAG
  TTGCATGTGG GCAAGGAATG GAGGAATTAT GTAAATACAG TGCTAGTTTA TTAAATTATA
  TAAATAAATA TATTATTAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4327324	D5Mit204-1	WIMOUSESNPS	MITROCHE_POP	f	SNP	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3090419					SNP	T	T	T	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:78918763 () rs orientation: forward

Symbol	Name	Function Class
D5Mit204	DNA segment, Chr 5, Massachusetts Institute of Technology 204	60 bp proximal
D5Mit204.1	DNA segment, Chr 5, Massachusetts Institute of Technology 204.1	within coordinates