rs30904242 SNP Detail

Summary

• ID
  rs30904242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:159270240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTACTCTG TGCCAGGTAT TGGGCTCTTT TGCTAGCAAT
  TTATTCTAGC AAGTATTGTT TTGTTTCATA ATGATAATTG TTAAGATGCT ACAGAACTGG
  Y
  TTAACCCAAA AATATAGGTC ATTGGGAGAT AAGTTTCCAT AAATAGACTC TAAAGAAAAA
  AATATTTTTA ATACACAGCG AGTGAAGTAT ACGGGATTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44976241	mCV23471929	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss49725339	NES13055671	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C		C	T	C	C	T	C	C	T	C
ss145864152	ENSMUSSNP4092124	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30904242					SNP	C	C	C	C	T	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49725339	NES13055671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:159270240 () rs orientation: forward

Symbol	Name	Function Class
Rr421534	regulatory region 421534	1492 bp proximal