rs30904316 SNP Detail

Summary

• ID
  rs30904316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134807889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATC TCACCAGTTC ACTCCCCCAA
  Y
  CCTGAGCTAT TTTCCTGGGG CTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45977797	mCV24013539	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss321982539	CHEV_6_134780944	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30904316					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134807889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	283 bp distal
Crebl2	cAMP responsive element binding protein-like 2	within coordinates
Gm67917	predicted gene, 67917	831 bp upstream
Rr368197	regulatory region 368197	662 bp downstream
Rr639728	regulatory region 639728	842 bp distal
Rr639729	regulatory region 639729	661 bp distal
Rr639730	regulatory region 639730	within coordinates
Rr639731	regulatory region 639731	444 bp distal
Tssr59250	transcription start site region 59250	747 bp downstream
Tssr59251	transcription start site region 59251	656 bp downstream
Tssr59252	transcription start site region 59252	589 bp downstream
Tssr59253	transcription start site region 59253	152 bp downstream
Tssr59254	transcription start site region 59254	106 bp upstream