rs30904583 SNP Detail

Summary

• ID
  rs30904583
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167197741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGATGGCGC CCAAGCTTTC TACCACACCT TGAGCCCTGC
  TTCTGGTCTT GGGCGCCTCC TACTGTGCAT GCGTGATCAT GGAGCCTCAG TAATTGTGTA
  S
  GAGGGTTTCC AATGTCCCTA ATGGCTCATG TACTTACTTG AAACTTGGTG CCCCGTTGGT
  GATGTTTTAG GAGGCTGTGG GATCTTTGGG ACATACTTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44976053	mCV22658252	ABI	CRAMUS_MOUSE	f	SNP		C	C					C	G
ss60342655	NES15844366	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		G	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30904583					SNP	C	C	C	C	C	C	C	C	G	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60342655	NES15844366	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167197741 () rs orientation: forward

Symbol	Name	Function Class
Aldh9a1	aldehyde dehydrogenase 9, subfamily A1	1641 bp downstream
Mgst3	microsomal glutathione S-transferase 3	1794 bp downstream
Rr396523	regulatory region 396523	within coordinates
Rr422697	regulatory region 422697	160 bp distal
Rr422698	regulatory region 422698	87 bp distal
Rr422699	regulatory region 422699	30 bp distal
Rr422700	regulatory region 422700	44 bp proximal
Rr422701	regulatory region 422701	243 bp proximal