rs30904630 SNP Detail

Summary

• ID
  rs30904630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119668144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTCTAAC TCTACATGCT
  AGAGATGGAA AAGAACTAGT CAGTCATCTT TCTTGGTCTG ATGAGGCCAG GATTGTTCCA
  GAAAACTGGA CAATTGTAGT GCTTTACTGA AGAATTTATG TGTAAATGGG CCATGCTGTC
  TTCTGGTGAA AGATGACTTC TCATTCTGGG TGCAGAGCGA TATGCAAGCA TGGTTAGGTC
  Y
  GCATGTCATT TCCCATGGCA ATCCTCTGCA TTTCTCTGGC ACTTCATGCT CTCTAGTTAC
  ATGGAAAAGC TTTTTTGTTT GCTTAATTAT TAAGAATTTA ATTTAATGGC TTAAAGAATC
  TCGTTTTTCC TATGAATCAT CACCAGGAAA AACTAAAAAA AAAAAGTTTA CTATTAATTG
  CTTACTGTAC AAGGTGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45976746	mCV22294991	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss60934192	NES16201076	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		C	C	C	C	C	T	T	C	C
ss133592551	ENSMUSSNP5660751	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30904630					SNP	C	C	T	C	T	C	T	C	C	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60934192	NES16201076	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119668144 () rs orientation: forward

Symbol	Name	Function Class
Erc1	ELKS/RAB6-interacting/CAST family member 1	within coordinates
Tssr58512	transcription start site region 58512	983 bp downstream