rs3090562 SNP Detail

Summary

• ID
  rs3090562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137091704 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGAGT GGAGGGCACA ACACTTTCAT
  Y
  CAGCAAAATC GTTTGTGTTC CAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4327467	M-11666-1	WIMOUSESNPS	MITROCHE_POP	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3090562					SNP	T	T	T	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137091704 () rs orientation: reverse

Symbol	Name	Function Class
Rr622785	regulatory region 622785	454 bp distal
Rr622786	regulatory region 622786	558 bp distal
Serpine1	serine (or cysteine) peptidase inhibitor, clade E, member 1	within coordinates
Tssr53888	transcription start site region 53888	920 bp upstream
Tssr53889	transcription start site region 53889	785 bp upstream
Tssr53890	transcription start site region 53890	188 bp upstream
Tssr53891	transcription start site region 53891	135 bp downstream
Tssr53892	transcription start site region 53892	209 bp downstream