rs30905881 SNP Detail

Summary

• ID
  rs30905881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:72974657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTCTGT TTTGTATGCA
  AACTAACATA TGGGTTCCAA ATGCAAAGAT GACATTGCAC AGTCTCTGCA CATGGCTGGA
  CATTTGTGAC TTCTCACCTT ATTTATGCCT AGATAACTTA GAAAGCCCGT CAAACATTGA
  TTGTAAGTTA ATTGGAAATG ACAAGGATAT ACTTGTTTTG CTGTTGTACT TTAAATTGCC
  Y
  GTGTTTCATC CAGCTCTGCC TTTAGTTTTC TGTGCTTTAA CATTCTGAGA AAAGATTGCT
  TTTATGGTCC GAATGCAAAT TATTGTATGA GGTGACTAAA TTGGCACAAG GTGCATAGTC
  TTATAAATAT GGATGCTTTC CATCCAGGGT TGTATGTGAT GTTCCTGGTA GTTTTAACAG
  GAGAGTTATG ACTGTGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	PWD/PhJ
ss45479906	mCV24617940	ABI	CRAMUS_MOUSE	f	SNP	C	T		C
ss50986078	NES13919707	PERLEGEN	MM_PANEL2	f	SNP		T	C		C	C
ss135306257	ENSMUSSNP3294877	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	PWD/PhJ
rs30905881					SNP	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50986078	NES13919707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:72974657 () rs orientation: forward

Symbol	Name	Function Class
Gm20754	predicted gene, 20754	within coordinates
Gm38353	predicted gene, 38353	within coordinates
Rr578299	regulatory region 578299	963 bp distal
Rr578300	regulatory region 578300	1029 bp distal
Rr578301	regulatory region 578301	660 bp distal
Tssr29555	transcription start site region 29555	995 bp downstream
Tssr29556	transcription start site region 29556	980 bp downstream
Tssr29557	transcription start site region 29557	965 bp downstream