rs30906425 SNP Detail

Summary

• ID
  rs30906425
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58544716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATT TGGATTCGCT TATTCCGAAC
  W
  TATCATACTT AGAACCAACA GTAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44977010	mCV22736685	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30906425					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58544716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	313 bp distal
Gm15834	predicted gene 15834	within coordinates
Orc2	origin recognition complex, subunit 2	602 bp upstream
Rr396056	regulatory region 396056	308 bp downstream
Rr411446	regulatory region 411446	1908 bp distal
Rr411447	regulatory region 411447	459 bp distal
Rr411448	regulatory region 411448	574 bp distal
Rr411449	regulatory region 411449	390 bp distal
Rr411450	regulatory region 411450	within coordinates
Tssr6780	transcription start site region 6780	395 bp downstream
Tssr11783	transcription start site region 11783	615 bp upstream
Tssr11784	transcription start site region 11784	592 bp upstream