rs30906474 SNP Detail

Summary

• ID
  rs30906474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136378355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGTAAAAA AAAAAGGTGA TAAAGCCTCA GATGCACCGC
  TGTCTTGTGC AATGATCAGC AAGTATCTCC TTAATGTGTG ACGTTTAGGC ATAGCTCCAA
  Y
  GCAAAGATAC TTTGTTTCCT AAACAAAGTA ATAGTTTACA AAGATGATAC TATGTGTTGG
  TAGAAAAAAA AGTCCTGTCA CATTCCCTGT TTAGATGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45478528	mCV25269115	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss135936917	ENSMUSSNP1622165	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320974485	CHEV_3_136335558	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs30906474					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136378355 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13862	CpG island 13862			205 bp distal
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr398057	regulatory region 398057			1492 bp downstream
Rr585837	regulatory region 585837			1814 bp distal
Rr585838	regulatory region 585838			91 bp distal
Rr585839	regulatory region 585839			1524 bp proximal
Rr585840	regulatory region 585840			1939 bp proximal
Tssr31873	transcription start site region 31873			1992 bp downstream
Tssr31874	transcription start site region 31874			1866 bp downstream
Tssr31875	transcription start site region 31875			1770 bp downstream
Tssr31876	transcription start site region 31876			1720 bp downstream
Tssr31877	transcription start site region 31877			502 bp upstream