rs30907198 SNP Detail

Summary

• ID
  rs30907198
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89340645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC TTGGTTTTCC CCCAAGTGAA
  W
  CCCCACCCCT CCACGTGATG GAGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45977922	mCV22633802	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	T
ss133372194	ENSMUSSNP6742212	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
ss321852063	CHEV_6_89313657	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30907198					SNP	T	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89340645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	278 bp distal
Plxna1	plexin A1	1050 bp upstream
Rr146639	regulatory region 146639	44 bp distal
Rr152199	regulatory region 152199	662 bp proximal
Tssr57621	transcription start site region 57621	953 bp upstream
Tssr62008	transcription start site region 62008	1089 bp upstream
Tssr62009	transcription start site region 62009	1026 bp upstream
Tssr62010	transcription start site region 62010	70 bp upstream
Tssr62011	transcription start site region 62011	721 bp downstream
Tssr62012	transcription start site region 62012	832 bp downstream