rs30907250 SNP Detail

Summary

• ID
  rs30907250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36786529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATGTAC CACACCTAGA
  GCGGGCAGCA ATTGGCAGTT GGCAAGCTCT AGGGCAACCT GAGAAGTGGA GGTAGGAAAT
  GAGACCTGTC TACTGATACA CCCTTTCTTC TCTCTCATGC CTACTGGGCC AGACACACCC
  ACCAAAGCTC CAGGTTTTAC AAAGAGCACA AATGTGCCCT CTCCCGCGCT TTGCATGCTC
  Y
  GGCAGGTAGC AGGAATTCGG TCCCCATGCA CTCTCCACAG CCCAAAAGCT GCTTTCCTTC
  TTCCCATCCA AGCACATGCT AGGTTACTTA GCTCATTCCC CCCAAAATTT CCTTTCGGCT
  GTTTTGCCTT CTGGAGCAAG TCCGTTTTTA AAAGCAGTCC TATTTAGCGG ACTCCAGGCA
  GCCTCTCTCC TGCTCCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45976869	mCV22310709	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss133122055	ENSMUSSNP6322092	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30907250					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36786529 () rs orientation: forward

Symbol	Name	Function Class
Gm53282	predicted gene, 53282	894 bp downstream
Ptn	pleiotrophin	within coordinates
Rr146140	regulatory region 146140	within coordinates
Tssr60337	transcription start site region 60337	344 bp downstream
Tssr60338	transcription start site region 60338	387 bp downstream
Tssr60339	transcription start site region 60339	409 bp downstream
Tssr60340	transcription start site region 60340	444 bp downstream
Tssr60341	transcription start site region 60341	477 bp downstream
Tssr60342	transcription start site region 60342	505 bp downstream
Tssr60343	transcription start site region 60343	542 bp downstream
Tssr60344	transcription start site region 60344	567 bp downstream