rs30907791 SNP Detail

Summary

• ID
  rs30907791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72535180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCC AAGCCTGCTC TGAAGGAGGG
  Y
  AACCCCGAGG AAGACATTAC AGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45978050	mCV24951505	ABI	CRAMUS_MOUSE	f	SNP		T			T		C
ss51696099	NES14820951	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T		C	C	T		C		T	C		T
ss133285604	ENSMUSSNP2957597	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C				C
ss321822121	CHEV_6_72508191	CHEVERUD	SCREENING_POP	f	SNP									C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30907791					SNP	T	T	T	T	T	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51696099	NES14820951	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72535180 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57147	transcription start site region 57147	854 bp downstream
Tssr57148	transcription start site region 57148	476 bp upstream
Tssr57149	transcription start site region 57149	569 bp upstream
Tssr61469	transcription start site region 61469	382 bp upstream