rs30908682 SNP Detail

Summary

• ID
  rs30908682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135873920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTGTCT CTGAGCCTCT
  TAATGGGACA CGCAGCGGCT ATTGTACCAA GTAGCATCTG AGGCTGCCTG GGGCATGCAC
  ACAAACTAAC AAACTAACCA ACAACAAACA AAAAACCTAA AACCTGAACA GCTGTGCGAT
  TTCACCCCTT ATTATTACCA CTGAGTATTG ATCTCACGCC TGTTTACCAT TTTCCTGCCC
  Y
  GTGTTGTCAT CTCCTGAAGG CATGACTTTG TCACACAAAG GCTGCGAAGA GGTTGCTGCT
  GGGTGGTTCT CATGACCAAT TCCAGCATGT CTTGGTGGCC ACCAGATGCC TAGGAAGTGC
  CTGTTACAGG GCAGTAGGTA AGACCATGCC AGCTCTGGGC AGGAGGGCAC ATGCACAGGG
  AGACAGACAT AAAACACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49682738	NES12985340	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30908682					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682738	NES12985340	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135873920 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	737 bp upstream
Rr419321	regulatory region 419321	922 bp distal
Rr419322	regulatory region 419322	1190 bp distal
Rr419323	regulatory region 419323	139 bp distal
Rr419324	regulatory region 419324	296 bp distal