rs3090873 SNP Detail

Summary

• ID
  rs3090873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10835964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA CCATTGACCA GGAAGATGAG
  R
  ATGGCCAAAC AGAAGATGCC CAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss4327785	M-04777-1	WIMOUSESNPS	MITROCHE_POP	f	SNP		G	G		G		G			G		G	A	G
ss50599536	NES13639304	PERLEGEN	MM_PANEL2	f	SNP	G			G		G		G	G		G		A		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3090873					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50599536	NES13639304	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10835964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10623	CpG island 10623	366 bp proximal
Cpgi10624	CpG island 10624	1582 bp proximal
Slc15a3	solute carrier family 15, member 3	685 bp downstream
Tmem132a	transmembrane protein 132A	within coordinates
Tssr155140	transcription start site region 155140	1179 bp upstream
Tssr155141	transcription start site region 155141	1222 bp upstream
Tssr155142	transcription start site region 155142	1287 bp upstream