rs3090944 SNP Detail

Summary

• ID
  rs3090944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17161194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGATAATC TCTGTGGTTT
  ATGATAATAA TCTGAACAGC AAACAGTGCC ATTAAGTGCA CAGATGTTAA TGCAACTAAT
  GGTTGTGCCA GCTATTCCCT AGAGGTCCTA GACACACAGA CTGCCTTAGC CCCCACACCT
  CTGTCCCTAG GAGAATGAAT GGGCAGAGTG GAGCTGACAC TCTCTCCTCA GGCAGCCTCC
  W
  CAGCCTTTAT TCGTCAACGG CCTCTGCTCA GCCAGGCCCT TCCAGACAAA AGGCACTGAG
  GAACTTGCAC CCCTTCCAGG GAGGGTGTCC AAGTAGCACC GTTCCTGCCC AGTGGGAAAG
  CAATCCCAAC ATGTCTGAGA TGTTCGGACT TTTAAATTCA TGTAAATATC TCCTCTTCTG
  CTGTGTGTAC ATAGGACTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss4327857	M-06957-1	WIMOUSESNPS	MITROCHE_POP	f	SNP		T	T		T		T			T		T		A
ss8734795	WI_WGS_16_16815208	WI	MOUSE	f	SNP													T		A
ss48151489	NES12127894	PERLEGEN	MM_PANEL2	f	SNP	T			T		T		T	T		T			A		T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3090944					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48151489	NES12127894	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17161194 () rs orientation: forward

Symbol	Name	Function Class
Gm24927	predicted gene, 24927	1318 bp upstream
Pi4ka	phosphatidylinositol 4-kinase alpha	within coordinates
Serpind1	serine (or cysteine) peptidase inhibitor, clade D, member 1	within coordinates