rs30909465 SNP Detail

Summary

• ID
  rs30909465
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135873553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCAATTG CTGCCCCAGC
  TGTAGGCTGG TTGCAACCCC CACCCTCAAT ACCCACACAA GACTGAATGG GGTCCCAGGG
  TCTTAAGGAA AGCGAAACGA CAGACTGTAG GTGAGTGCTC AGGGAAGCAG TCTTCTTGTT
  TCAGCTTCCC TCTTCCAGGA AGGTCCTCTA GCGTTTAGTT CCCTTGAAGC CTTGAAGCTG
  W
  AAGCTACCTT CAGAGCCTTT TCTCCCACCT GTGAAGCTAC AGTTCCTTCT TGGTCACCAG
  AGGGCGCTCT TACCTACGGT CCCAAGGCTC TCCTCCAGGC TTGGCTCAGG ACCCACTTTA
  CTTCCTGTGT CTTATGGCCT CGTGGCCAGA ACTGTCCTCC AAGGTGAAGA CTGTCTCTGA
  GCCTCTTAAT GGGACACGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49682741	NES12985336	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30909465					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682741	NES12985336	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135873553 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	370 bp upstream
Rr419321	regulatory region 419321	555 bp distal
Rr419322	regulatory region 419322	823 bp distal
Rr419323	regulatory region 419323	within coordinates
Rr419324	regulatory region 419324	50 bp proximal