rs30909466 SNP Detail

Summary

• ID
  rs30909466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135873422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGAAGTCT ATTCTGCCAC
  TTACTCAGGC AAGGTCCTCT CTGAGCCTTA TTTGTTCTCT GAGGGAATTA GACTACCCTG
  TCTCCATGAC TGCCCTGAGA TCAGGCCTAG ATATAGACTT GGTAGGCTTA GGGACCAATT
  GCTGCCCCAG CTGTAGGCTG GTTGCAACCC CCACCCTCAA TACCCACACA AGACTGAATG
  R
  GGTCCCAGGG TCTTAAGGAA AGCGAAACGA CAGACTGTAG GTGAGTGCTC AGGGAAGCAG
  TCTTCTTGTT TCAGCTTCCC TCTTCCAGGA AGGTCCTCTA GCGTTTAGTT CCCTTGAAGC
  CTTGAAGCTG TAAGCTACCT TCAGAGCCTT TTCTCCCACC TGTGAAGCTA CAGTTCCTTC
  TTGGTCACCA GAGGGCGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49682742	NES12985335	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30909466					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682742	NES12985335	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135873422 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	239 bp upstream
Rr419321	regulatory region 419321	424 bp distal
Rr419322	regulatory region 419322	692 bp distal
Rr419323	regulatory region 419323	within coordinates
Rr419324	regulatory region 419324	181 bp proximal