rs30909467 SNP Detail

Summary

• ID
  rs30909467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135873346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAGGCA TCCAGGGAGC
  CCTGAGCTAG AGGTGCCCGT AGAATGCATA GCCGCAAATC CAGAACTACC TTGGAGACGG
  AAGTCTATTC TGCCACTTAC TCAGGCAAGG TCCTCTCTGA GCCTTATTTG TTCTCTGAGG
  GAATTAGACT ACCCTGTCTC CATGACTGCC CTGAGATCAG GCCTAGATAT AGACTTGGTA
  R
  GCTTAGGGAC CAATTGCTGC CCCAGCTGTA GGCTGGTTGC AACCCCCACC CTCAATACCC
  ACACAAGACT GAATGGGGTC CCAGGGTCTT AAGGAAAGCG AAACGACAGA CTGTAGGTGA
  GTGCTCAGGG AAGCAGTCTT CTTGTTTCAG CTTCCCTCTT CCAGGAAGGT CCTCTAGCGT
  TTAGTTCCCT TGAAGCCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49682743	NES12985331	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30909467					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682743	NES12985331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135873346 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	163 bp upstream
Rr419321	regulatory region 419321	348 bp distal
Rr419322	regulatory region 419322	616 bp distal
Rr419323	regulatory region 419323	29 bp proximal
Rr419324	regulatory region 419324	257 bp proximal