rs30909468 SNP Detail

Summary

• ID
  rs30909468
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135873214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAACTTT GATCCTCATG
  GAAACTCTAG AAAGATTCGC CTAGGACTTT CATTTTGCGA TGAGGAACTG AGCGCAACAA
  TGTTAACCAA CTTGCCCAAG ACAATGCGAC CAGTTAGGAC GGAGCCAGGA TTAACCAAGG
  CATCCAGGGA GCCCTGAGCT AGAGGTGCCC GTAGAATGCA TAGCCGCAAA TCCAGAACTA
  S
  CTTGGAGACG GAAGTCTATT CTGCCACTTA CTCAGGCAAG GTCCTCTCTG AGCCTTATTT
  GTTCTCTGAG GGAATTAGAC TACCCTGTCT CCATGACTGC CCTGAGATCA GGCCTAGATA
  TAGACTTGGT AGGCTTAGGG ACCAATTGCT GCCCCAGCTG TAGGCTGGTT GCAACCCCCA
  CCCTCAATAC CCACACAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49682744	NES12985329	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30909468					SNP	C	C	C	C	C	G	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682744	NES12985329	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135873214 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	31 bp upstream
Rr419321	regulatory region 419321	216 bp distal
Rr419322	regulatory region 419322	484 bp distal
Rr419323	regulatory region 419323	161 bp proximal
Rr419324	regulatory region 419324	389 bp proximal