rs30909469 SNP Detail

Summary

• ID
  rs30909469
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135873183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAGAAGT AACAGTAGTA
  CCTTGACAGA AAGGCAACTT TGATCCTCAT GGAAACTCTA GAAAGATTCG CCTAGGACTT
  TCATTTTGCG ATGAGGAACT GAGCGCAACA ATGTTAACCA ACTTGCCCAA GACAATGCGA
  CCAGTTAGGA CGGAGCCAGG ATTAACCAAG GCATCCAGGG AGCCCTGAGC TAGAGGTGCC
  V
  GTAGAATGCA TAGCCGCAAA TCCAGAACTA CCTTGGAGAC GGAAGTCTAT TCTGCCACTT
  ACTCAGGCAA GGTCCTCTCT GAGCCTTATT TGTTCTCTGA GGGAATTAGA CTACCCTGTC
  TCCATGACTG CCCTGAGATC AGGCCTAGAT ATAGACTTGG TAGGCTTAGG GACCAATTGC
  TGCCCCAGCT GTAGGCTGGT                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44984610	mCV23000885	ABI	CRAMUS_MOUSE	f	SNP	A	C					C
ss49682745	NES12985326	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		C	C	C	C	C	C	C	G	C
ss145549651	ENSMUSSNP5672092	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30909469					SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682745	NES12985326	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135873183 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	within coordinates
Rr419321	regulatory region 419321	185 bp distal
Rr419322	regulatory region 419322	453 bp distal
Rr419323	regulatory region 419323	192 bp proximal
Rr419324	regulatory region 419324	420 bp proximal