rs30909470 SNP Detail

Summary

• ID
  rs30909470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135873178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGATTTA GAAGTAACAG
  TAGTACCTTG ACAGAAAGGC AACTTTGATC CTCATGGAAA CTCTAGAAAG ATTCGCCTAG
  GACTTTCATT TTGCGATGAG GAACTGAGCG CAACAATGTT AACCAACTTG CCCAAGACAA
  TGCGACCAGT TAGGACGGAG CCAGGATTAA CCAAGGCATC CAGGGAGCCC TGAGCTAGAG
  R
  TGCCCGTAGA ATGCATAGCC GCAAATCCAG AACTACCTTG GAGACGGAAG TCTATTCTGC
  CACTTACTCA GGCAAGGTCC TCTCTGAGCC TTATTTGTTC TCTGAGGGAA TTAGACTACC
  CTGTCTCCAT GACTGCCCTG AGATCAGGCC TAGATATAGA CTTGGTAGGC TTAGGGACCA
  ATTGCTGCCC CAGCTGTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49682746	NES12985324	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30909470					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682746	NES12985324	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135873178 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	within coordinates
Rr419321	regulatory region 419321	180 bp distal
Rr419322	regulatory region 419322	448 bp distal
Rr419323	regulatory region 419323	197 bp proximal
Rr419324	regulatory region 419324	425 bp proximal