rs30909471 SNP Detail

Summary

• ID
  rs30909471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135872936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCTTTGCC CACAGCCTCT GCCGTATCCT
  TCCTCTATTG TGGGGGGGTG GGGGGGGTCG TGATAATGCG GTCTGGTCTG GCAACTTTAC
  ACCAGCTTCA GAAAGCTCCT CCTTGATAGC AGAGAGCAGG TCCACACTGC CCGAAGCCTG
  Y
  GCGGCCCCAG GATGAGGGAT GGGGGTGAGC GGGCGTGGCA TATGAGATTT AGAAGTAACA
  GTAGTACCTT GACAGAAAGG CAACtttgat cctcatggaa actctagaaa gattcgccta
  ggactttcat tttgcgatga ggaactgagc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49682747	NES12985414	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C		C	C	C		C
ss319994061	CHEV_1_137841775	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30909471					SNP	C	C	C	C	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682747	NES12985414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135872936 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	within coordinates
Rr419321	regulatory region 419321	within coordinates
Rr419322	regulatory region 419322	206 bp distal
Rr419323	regulatory region 419323	439 bp proximal
Rr419324	regulatory region 419324	667 bp proximal