rs30909595 SNP Detail

Summary

• ID
  rs30909595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52183045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGGCCG GGACAGGGCT
  GGGGCCCAGC TCGTAGACCC TTTCTTTTCA GTAGCCAGAG CCGATTTGGC GATGCCCTTT
  AGAATTTGAT GGCGAGGGAC CAAGGCGGAA AAGCCCAGGC ACCAAACAGG GCACTGCCTG
  GGGCTCCTTC TTCCCCCACA ACCCCGCGTC TGTGGCTCAC AGAGCGCAGA GGCGCTAACA
  S
  AGCAGCAGGG CCAATTCTGG GTGCATCGCG GGCCTCGCAA GCTGGCTTGG GCAGCCTTGG
  GGAGAAAACC TGTGTGTTTG TGTGTACAGT GCGTCTGTCC CACAGCTGAC GTTGGGTGTG
  TGGGGTTTTG TTTGTTTGTT TTCTGTAATA AGTAAATGCG TAGCCGCTTG CAAAGGTTTG
  GACGCTTTTC CCTAAGCTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45978197	mCV22669487	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C	C
ss133191041	ENSMUSSNP6408950	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30909595					SNP	G	G	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52183045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17423	CpG island 17423	1193 bp distal
Cpgi17424	CpG island 17424	within coordinates
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	within coordinates
Hoxa5	homeobox A5	1608 bp upstream
Hoxa6	homeobox A6	223 bp downstream
Hoxaas3	Hoxa cluster antisense RNA 3	within coordinates
Tssr60991	transcription start site region 60991	1815 bp upstream
Tssr60992	transcription start site region 60992	1803 bp upstream
Tssr60993	transcription start site region 60993	1727 bp upstream
Tssr60994	transcription start site region 60994	1657 bp upstream
Tssr60995	transcription start site region 60995	1602 bp upstream