rs3090960 SNP Detail

Summary

• ID
  rs3090960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83466092 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGTAT ATAAACATTT TTTTTTTCTG
  Y
  TCCACTTTAA AGTGGCATAT CTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4327875	M-06995-1	WIMOUSESNPS	MITROCHE_POP	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3090960					SNP	T	T	T	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83466092 () rs orientation: reverse

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103714	transcription start site region 103714	586 bp downstream
Tssr103715	transcription start site region 103715	536 bp downstream
Tssr103716	transcription start site region 103716	84 bp upstream
Tssr109677	transcription start site region 109677	1582 bp upstream
Tssr109678	transcription start site region 109678	1201 bp upstream
Tssr109679	transcription start site region 109679	917 bp upstream
Tssr109680	transcription start site region 109680	666 bp upstream
Tssr109681	transcription start site region 109681	547 bp upstream
Tssr109682	transcription start site region 109682	272 bp upstream
Tssr109683	transcription start site region 109683	224 bp upstream
Tssr109684	transcription start site region 109684	198 bp upstream
Tssr109685	transcription start site region 109685	157 bp upstream
Tssr109686	transcription start site region 109686	88 bp upstream
Tssr109687	transcription start site region 109687	34 bp upstream
Tssr109688	transcription start site region 109688	within coordinates
Tssr109689	transcription start site region 109689	38 bp downstream
Tssr109690	transcription start site region 109690	51 bp downstream
Tssr109691	transcription start site region 109691	61 bp downstream
Tssr109692	transcription start site region 109692	92 bp downstream
Tssr109693	transcription start site region 109693	203 bp downstream
Tssr109694	transcription start site region 109694	597 bp downstream
Tssr109695	transcription start site region 109695	647 bp downstream
Tssr109696	transcription start site region 109696	1681 bp downstream
Tssr109697	transcription start site region 109697	1871 bp downstream