rs30909736 SNP Detail

Summary

• ID
  rs30909736
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9962641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG TACTCTTGGT TCTGAGTTAC
  W
  TGCTAGACTG TCGTGGGAAC ACACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44977293	mCV23006765	ABI	CRAMUS_MOUSE	f	SNP	A	A	T					A		A
ss50605190	NES13645679	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A	T		T	A	A	T		T	A	A	T		T
ss146039589	ENSMUSSNP1127643	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
ss325719632	CHEV_19_10059767	CHEVERUD	SCREENING_POP	f	SNP													T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30909736					SNP	A	A	T	A	T	A	T	A	T	A	A	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605190	NES13645679	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9962641 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	within coordinates
Cpgi10595	CpG island 10595	1892 bp distal
Fth1	ferritin heavy polypeptide 1	179 bp downstream
Rr543966	regulatory region 543966	1275 bp distal
Rr543967	regulatory region 543967	695 bp distal
Tssr155006	transcription start site region 155006	1058 bp downstream
Tssr155007	transcription start site region 155007	985 bp downstream
Tssr155008	transcription start site region 155008	694 bp downstream
Tssr155009	transcription start site region 155009	348 bp downstream
Tssr155010	transcription start site region 155010	160 bp downstream
Tssr158137	transcription start site region 158137	1040 bp upstream
Tssr158138	transcription start site region 158138	951 bp upstream
Tssr158139	transcription start site region 158139	658 bp upstream
Tssr158140	transcription start site region 158140	437 bp upstream
Tssr158141	transcription start site region 158141	409 bp upstream
Tssr158142	transcription start site region 158142	384 bp upstream
Tssr158143	transcription start site region 158143	318 bp upstream
Tssr158144	transcription start site region 158144	180 bp upstream