rs30909739 SNP Detail

Summary

• ID
  rs30909739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170978581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC CCCCCTCCTT CCAAGTTGTC
  Y
  TAAAAATCCC CTAGTTAGCT GGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44977296	mCV24422420	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss49750971	NES13034809	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	T	C		T	C	C	C		C	C	C	C		C
ss119995572	PARCsnp_1.11863	PARC_SEQ	INBRED	f	SNP								T		C
ss119997117	PARCsnp_1.00827	PARC_SEQ	INBRED	f	SNP								T		C
ss146155020	ENSMUSSNP5485106	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320116727	CHEV_1_173081143	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30909739					SNP	C	C	C	T	T	T	C	T	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750971	NES13034809	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170978581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	252 bp distal
Mpz	myelin protein zero	within coordinates
Rr396555	regulatory region 396555	60 bp downstream
Rr423226	regulatory region 423226	432 bp distal
Rr423227	regulatory region 423227	289 bp distal
Rr423228	regulatory region 423228	within coordinates
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	372 bp upstream
Tssr14985	transcription start site region 14985	403 bp upstream