rs30909746 SNP Detail

Summary

• ID
  rs30909746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119909363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTACATG TAGAGGAAAG TTTTGCATAG AATGAGCCTA
  TATTGATATA AGGACCAGGC ATAGCCACCC CTCCTGTCTG AGGCAGAAAC CCAAGAGGAA
  Y
  TGAGTAGAGG AGTAACGAGT TTAGGATACT TAGGTTGGGT GCAGGGGCGG GGCGAATCAG
  AGGTCAGCCA AGAGTATTGG TCCTAGACCC ACAAATACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46456798	mCV22556071	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		C
ss61734975	NES17669800	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	C		T	C	T	T		T	C	T	T		T
ss138915079	ENSMUSSNP7025466	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss324207699	CHEV_12_121184101	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30909746					SNP	C	C	T	C	T	T	C	T	T	C	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61734975	NES17669800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119909363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	238 bp proximal
Rr474318	regulatory region 474318	within coordinates
Tmem196	transmembrane protein 196	194 bp upstream
Tssr115576	transcription start site region 115576	476 bp upstream