rs3090993 SNP Detail

Summary

• ID
  rs3090993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34876835 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AACCT ATCCTGGATG CCATGGATGC
  R
  AAGAAGAGGA GGCAGCAGAA TTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	129X1/SvJ	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss4327908	M-07047-1	WIMOUSESNPS	MITROCHE_POP	f	SNP		A		G		G		G				G		G							G					G
ss16381453	C15.032.500	TWGNF	TWGNF-Mouse-2	f	SNP	A		A		G				G	G	A		G		G	G	G	A	A	G	G	G	G	A	G		G	G	G	G	A	A	G	A	G	A	G	A	A	G	G	G	G	A		G	G	G	G	A	G	A	G
ss49449286	NES12597376	PERLEGEN	MM_PANEL2	r	SNP	C				C		C		C	C			C								C						C		C			T					C		T		C				T								C
ss147562937	ENSMUSSNP2848327	ENSEMBL	ENSEMBL_Sanger	r	SNP			T		C																						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	129X1/SvJ	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs3090993					SNP	?	A	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	G	G	A	A	G	A	G	A	G	A	A	G	G	G	G	A	A	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49449286	NES12597376	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34876835 () rs orientation: reverse

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	461 bp upstream
Tssr133983	transcription start site region 133983	348 bp upstream