rs30910209 SNP Detail

Summary

• ID
  rs30910209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135871470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTGTGC TGTAGCACAG
  CTTGGTGATG GGTCTCCAGA CCCTACTTCA TGGACCATGA CTGTGCCCAT GAGAGCTGAA
  GACTAGATGC AGACAGACCC TGGATGTGGA CAGGCTCTGG CTGTATGTTC CTGGGACTGG
  AAGCGGGAGG TAGGGAAACA GGGACATGGG CCTGGGTTTC CTGGTTTGGG GGAAGGCCCA
  Y
  GAGGCAGGAG TTATCCATTG AGAACTGCCA GGGGTAGCAC ACTGGCTGGT TGGATGTAGT
  TCTGATTAGT GGAGCCTGGG ACTAGGAAGG GCAAGGGAAG ACAGGAGGTA GTAACCCAGC
  CCAAGGGGCT GCCCTGAGCT GGCATGGGCC CAGTTCCCTG CTGTGAGCCT GCAGCTCCTA
  GCTCAGCTGC TCCACAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49682755	NES12985404	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30910209					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682755	NES12985404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135871470 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	431 bp downstream
Rr419320	regulatory region 419320	850 bp distal
Rr419321	regulatory region 419321	927 bp proximal
Rr419322	regulatory region 419322	1239 bp proximal
Rr419323	regulatory region 419323	1905 bp proximal