rs30911000 SNP Detail

Summary

• ID
  rs30911000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135870248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACGCAGGC AAtgtgtgtg tgtgtgtgtg
  tgggtgtgtg tgggtgCTAC TGCCAGAGAA ACAGCCACTC ATACCTGGGA ACACTTACTA
  GCCCCCACTA TGGAACCTCC CCAGGCCAGG GAGGGGATGT TCAACAGTAT ACATGCCATA
  Y
  AACTGGTACA TTTTTCCCCT GGAAGTCCAG GTCCTGTAAG ACCCCAGCCT GGTCTCCTCC
  TGGGCAAGGG GTAGTCCTTC CTGGTTGTGT CAAATGAGGC CTCCCGGGTG ACACCTCTCT
  GGGGGATGCC AGGTTTCGGG TAGGTCTACT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45138379	mCV23000896	ABI	CRAMUS_MOUSE	f	SNP	T					T		C
ss49682767	NES12985392	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		C	C	T		C	T	C	C		T
ss145549643	ENSMUSSNP3784085	ENSEMBL	ENSEMBL_Sanger	f	SNP	T							C
ss319994057	CHEV_1_137839087	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30911000					SNP	T	T	T	T	T	T	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682767	NES12985392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135870248 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	1653 bp downstream
Rr419320	regulatory region 419320	within coordinates