rs30911239 SNP Detail

Summary

• ID
  rs30911239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116898104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAACAAG CAAATCTTAT
  ACTCACCAAC TAGAACCTTT GCTGCGGGGT TGTCCACACC AATGTTCTTG AGAATGGTAG
  CACCGTCGTT GGTCACCATC AGAGCGGCGT CTCGTCCACT GCTTAGGAGA ATTTTGTCCT
  GAAAAGAAAT ATATTTCTGT CAAATTAAGG TCTAAGTACT TCTTCAAGAA TACATGCAGA
  Y
  ACCAAAACCT CTGGATAGTT AGTTGGCTAC TAAATGTTTT CTATGCATGT ATCCTACAAC
  CAAACCTCAA TGTGTAAAAA GCTTAGACAT ACAGGCAATA CAAACTAGCT CTGCTACACT
  GTCACAAGAC AGCAATGGAA ACAAATATCC CAGAACACTA TATGACAGTT AAACACACTA
  AAAGCAGATA CACATAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47996339	NES12000914	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss323494022	CHEV_10_116499255	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30911239					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996339	NES12000914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116898104 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	within coordinates
Cpgi2223	CpG island 2223	1016 bp proximal
Rr402250	regulatory region 402250	1533 bp upstream
Rr439433	regulatory region 439433	1554 bp proximal
Tssr99381	transcription start site region 99381	834 bp downstream
Tssr99382	transcription start site region 99382	1136 bp downstream
Tssr99383	transcription start site region 99383	1542 bp downstream
Tssr99384	transcription start site region 99384	1565 bp downstream