rs30912066 SNP Detail

Summary

• ID
  rs30912066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19243337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTAGAT TAGGTTGAGC
  TGCCTAAAAC CTCCTGCCTC AGTCACCACG CCCGATTCCA GTCACCTTTT CCTAGTGTAT
  GTAGTTGTTT TACATTACAA TGACTTAGTC AAGGAAGTTG TGACACTTAC TATCTTGTTA
  CATGAAAGTA AGTTGTGTCC ACATATATTG ATCACATATA TTGTACATAC ACAAAAATCA
  Y
  TTAAAAGGTA AAAATTATTT TTAAAAAGAA GGTAATAGAA ATGGGTTTGC GATTATATAC
  AACCGAGTTT GACTATAAAA TGCTTACGAG CTAAGAAAAG TCTCAGTCAC GATGTGCAGC
  TAACTCTCTA TCAACACCCT AATCTTTGAA TTGAAATGCA AGTCTAGTAA CTGAAGAGGA
  AACTTAAGGG TTCTTTAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45479880	mCV24717312	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss134665713	ENSMUSSNP6598453	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs30912066					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19243337 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	481 bp distal
Gm65217	predicted gene, 65217	302 bp downstream
Mtfr1	mitochondrial fission regulator 1	within coordinates
Rr397614	regulatory region 397614	886 bp downstream
Tssr28500	transcription start site region 28500	1857 bp downstream
Tssr28501	transcription start site region 28501	1822 bp downstream
Tssr28502	transcription start site region 28502	1811 bp downstream
Tssr28503	transcription start site region 28503	1800 bp downstream
Tssr28504	transcription start site region 28504	1075 bp downstream
Tssr28505	transcription start site region 28505	1065 bp downstream
Tssr28506	transcription start site region 28506	1051 bp downstream
Tssr28507	transcription start site region 28507	948 bp downstream
Tssr28508	transcription start site region 28508	900 bp downstream
Tssr28509	transcription start site region 28509	880 bp downstream