rs30912095 SNP Detail

Summary

• ID
  rs30912095
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116898652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAAAT ACCAGCAAGT
  TTTGTAAATG GTAACACTTG CTGCCACTGG AGAGGGATGT GAGATTGGGG ATGGTAACAC
  AGGAGAACGG TTTATAATTT GTAAGTTTTA GATTAAAAAA CATAAATAAG AACATTGTTA
  CTATCTACAT TTACACCAAA GGCTTTAAAC CATTATTAAA ATTTTGGCCA GCCACTACTA
  M
  GCAAGACCGC AGGAAAGCAA AATTAGAAAC AAACAAAAGA AACTTCTAAA AATTCCCTAT
  CTTTCTTACC ATGCCCTTCG GTCCCAAAGT GCTCTTCACC AAGTCTCCAA TGGCGATGGC
  ACCGATAAAC GACGACTTAA ATTATAAAAG AAAAATCAGA AAAGGCGGTC AGAATTTACC
  CTCACAAAGC GTTGGATTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47996345	NES12000917	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30912095					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996345	NES12000917	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116898652 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	within coordinates
Cpgi2223	CpG island 2223	468 bp proximal
Rr402250	regulatory region 402250	985 bp upstream
Rr439433	regulatory region 439433	1006 bp proximal
Rr439434	regulatory region 439434	1806 bp proximal
Tssr99381	transcription start site region 99381	286 bp downstream
Tssr99382	transcription start site region 99382	588 bp downstream
Tssr99383	transcription start site region 99383	994 bp downstream
Tssr99384	transcription start site region 99384	1017 bp downstream