rs30912100 SNP Detail

Summary

• ID
  rs30912100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116898993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAAAAG AAAAATCAGA
  AAAGGCGGTC AGAATTTACC CTCACAAAGC GTTGGATTTT ATCATTTAAA AGCAACAGAC
  GGGCTTACCA GGCGAGCTGT CTCGGCCCTC TCTTCATCAG CTCCAGCCTT GAAGATATTA
  ACAGGTGCGA GGGAAAGGGA AGCCTAAGAG AGGAAGCCAA CACACGCCGT TTGAATGCCA
  R
  TACTCGTTAA CACCCGTCCA GGGCCTCTCA CTAGATCGGG AAGTAGATTA TCTAAAGGAA
  AATTGGTTTA CCATCTAATT TCAGGAATCC GTCCTGGGAG TGGGGTATTT ACTTAAATGG
  GGAGAGGGAC GCTCATATGG GCGCCAGGAA TAAATCATCA CACCGACCCA CTGGTCTGAA
  TGGCAAAACT AAAGGCAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47996351	NES12000920	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G		G	G	A		A
ss323494024	CHEV_10_116500144	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30912100					SNP	G	G	G	G	A	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996351	NES12000920	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116898993 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	within coordinates
Cpgi2223	CpG island 2223	127 bp proximal
Rr402250	regulatory region 402250	644 bp upstream
Rr439433	regulatory region 439433	665 bp proximal
Rr439434	regulatory region 439434	1465 bp proximal
Rr439435	regulatory region 439435	1663 bp proximal
Tssr99381	transcription start site region 99381	30 bp upstream
Tssr99382	transcription start site region 99382	247 bp downstream
Tssr99383	transcription start site region 99383	653 bp downstream
Tssr99384	transcription start site region 99384	676 bp downstream