rs30912102 SNP Detail

Summary

• ID
  rs30912102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:116899032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACAAAG CGTTGGATTT
  TATCATTTAA AAGCAACAGA CGGGCTTACC AGGCGAGCTG TCTCGGCCCT CTCTTCATCA
  GCTCCAGCCT TGAAGATATT AACAGGTGCG AGGGAAAGGG AAGCCTAAGA GAGGAAGCCA
  ACACACGCCG TTTGAATGCC AGTACTCGTT AACACCCGTC CAGGGCCTCT CACTAGATCG
  R
  GAAGTAGATT ATCTAAAGGA AAATTGGTTT ACCATCTAAT TTCAGGAATC CGTCCTGGGA
  GTGGGGTATT TACTTAAATG GGGAGAGGGA CGCTCATATG GGCGCCAGGA ATAAATCATC
  ACACCGACCC ACTGGTCTGA ATGGCAAAAC TAAAGGCAAC ATTGGGCCGG TCGAGCACGG
  ACCAACATAG CTACCTAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47996353	NES12000921	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30912102					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996353	NES12000921	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116899032 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cct2	chaperonin containing TCP1 subunit 2			Intron
				mRNA-UTR
Cpgi2223	CpG island 2223			88 bp proximal
Rr402250	regulatory region 402250			605 bp upstream
Rr439433	regulatory region 439433			626 bp proximal
Rr439434	regulatory region 439434			1426 bp proximal
Rr439435	regulatory region 439435			1624 bp proximal
Rr439436	regulatory region 439436			1997 bp proximal
Tssr99381	transcription start site region 99381			69 bp upstream
Tssr99382	transcription start site region 99382			208 bp downstream
Tssr99383	transcription start site region 99383			614 bp downstream
Tssr99384	transcription start site region 99384			637 bp downstream