rs30912103 SNP Detail

Summary

• ID
  rs30912103
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:116899542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGTCGCC AAGGTCCCCT
  AGCCGAGAAA CAGCCCTGAT CTTACAAAGA GATGCTGACT TAGTGTGCGT TCCCCCTTCC
  CGTCCCGCGC GGAGAGCTCG GTCACCCGGT CCCACGCAGG CCTCATGCCC GGCCCGAGCC
  ATGTGCGGAG GGGCCAGGAG GCGGCCGCTC GGAGCCTGCG ACTCCGGTTA GACAAGAGGA
  S
  CAGCGGGGCG GCAGGACACA GCGGGGCGGA GCAGGGAGCC TAAGTCCTTG GCCGAAAGCT
  AGGCTCACCA TGGTTCCGAC GGATTCCGCG TAGAGGAGAG AACCCCTCAC AATCCGCGCC
  GGGAAGCCAG GCCGGGGAAA GAGAGAAAGG CGGAAGTGAC GACACGCTCC GCCGCGGGGG
  GCGGAGCCGG ACGCACGGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47996355	NES12000922	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C		C	C	G
ss323494027	CHEV_10_116500693	CHEVERUD	SCREENING_POP	f	SNP						C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30912103					SNP	C	C	C	G	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996355	NES12000922	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116899542 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	Intron
Cpgi2223	CpG island 2223	within coordinates
Rr402250	regulatory region 402250	95 bp upstream
Rr439433	regulatory region 439433	116 bp proximal
Rr439434	regulatory region 439434	916 bp proximal
Rr439435	regulatory region 439435	1114 bp proximal
Rr439436	regulatory region 439436	1487 bp proximal
Tssr99381	transcription start site region 99381	579 bp upstream
Tssr99382	transcription start site region 99382	271 bp upstream
Tssr99383	transcription start site region 99383	104 bp downstream
Tssr99384	transcription start site region 99384	127 bp downstream