rs30912206 SNP Detail

Summary

• ID
  rs30912206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136380174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGACAGAA GTATTTGGAG TAGATTAGAC TGTGGTGTTG
  AGCTTATGGC TGTGTTCTGG CTCTGGATAA TTCTTTTCTC ATCGTCAAAT ATTTGATAAT
  R
  GGCCTTTTAC CTTATCCCAA ACTGATTATA ATAATAGACT TTTCAGAGTC TGGCAGGCTG
  TCAGAGGGTA GATTCCTGGG AAGAGTCCTG TTGACTGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45478880	mCV25268831	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss135936926	ENSMUSSNP5322226	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss320974489	CHEV_3_136337377	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30912206					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136380174 () rs orientation: forward

Symbol	Name	Function Class
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	within coordinates
Rr585838	regulatory region 585838	1910 bp distal
Rr585839	regulatory region 585839	33 bp distal
Rr585840	regulatory region 585840	120 bp proximal
Tssr31877	transcription start site region 31877	1314 bp downstream