rs30912898 SNP Detail

Summary

• ID
  rs30912898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:157660325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTGCTC TCTTGGTTCT
  TAATAGTGTC CAGTTTTTTG TTTTTGTTTT TTCCCCCACT AAGTTGATTG ATCTATTCAT
  TCAGCAGATA AACATGGAGC TTCTAATATG TGGTAGTGTT TTTGGTGCTG GAGTTGCACA
  GGTGAACAGA TTAGCATAAT TCCTGTGTGT TGCTTGCTAG TTGAAGCACC AGAGAGTAGA
  Y
  AACCAGTGAA TTGAATGCAA AGTTACTGCC GTTATGGGTT GGGATAACCA CTGTTTGATG
  AAGTGAGCAG GAAATGTAAA TGCAGCTGGA GTTTAGAGAC TTGAGAGGTA GTAAGTGTGC
  TGTAGACTCT GTGAGGGCTT CTTTATGTAC CAACATGGAA TGCAGTCAGG AGTTTTCAGC
  TGAGGTCTGA CTGTGGTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47496870	NES10303688	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30912898					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47496870	NES10303688	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:157660325 () rs orientation: forward

Symbol	Name	Function Class
Ankrd13c	ankyrin repeat domain 13c	within coordinates
Rr588081	regulatory region 588081	430 bp distal
Rr588082	regulatory region 588082	324 bp distal
Rr588083	regulatory region 588083	1640 bp proximal